{ "_id": "6a1d434e1d7bb097a0a41862", "Package": "hhsmm", "Date": "2022-2-7", "Title": "Hidden Hybrid Markov/Semi-Markov Model Fitting", "Version": "0.2.5", "Authors@R": "c(person(\"Morteza\", \"Amini\", role = c(\"aut\", \"cre\",\"cph\"),\nemail = \"morteza.amini@ut.ac.ir\"),\nperson(\"Afarin\", \"Bayat\", role = \"aut\"),\nperson(\"Reza\", \"Salehian\", role = \"aut\"))", "Description": "Develops algorithms for fitting, prediction, simulation\nand initialization of the hidden hybrid Markov/semi-Markov\nmodel, introduced by Guedon (2005)\n, which also includes several\ntools for handling missing data, nonparametric mixture of\nB-splines emissions (Langrock et al., 2015\n), fitting regime switching regression\n(Kim et al., 2008 ) and\nauto-regressive hidden hybrid Markov/semi-Markov model, and\nmany other useful tools (read for more description:\n).", "License": "GPL-3", "RdMacros": "Rdpack", "Encoding": "UTF-8", "BugReports": "https://github.com/mortamini/hhsmm/issues", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\ntexlive libicu-dev libpng-dev libuv1-dev libgl1-mesa-dev\nlibx11-dev zlib1g-dev", "Repository": "https://mortamini.r-universe.dev", "Date/Publication": "2022-08-27 03:41:29 UTC", "RemoteUrl": "https://github.com/mortamini/hhsmm", "RemoteRef": "HEAD", "RemoteSha": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-01 08:25:43 UTC", "User": "root" }, "Author": "Morteza Amini [aut, cre, cph],\nAfarin Bayat [aut],\nReza Salehian [aut]", "Maintainer": "Morteza Amini ", "MD5sum": "b49e41187d04a9b47c03cebe0feb736b", "_user": "mortamini", "_type": "src", "_file": "hhsmm_0.2.5.tar.gz", "_fileid": "a156154990ec4713d656f7cd2e245f5b30ebccebe6847036679cf4dd662f81f4", "_filesize": 256973, "_sha256": "a156154990ec4713d656f7cd2e245f5b30ebccebe6847036679cf4dd662f81f4", "_created": "2026-06-01T08:25:43.000Z", "_published": "2026-06-01T08:31:10.005Z", "_distro": "noble", "_jobs": [ { "job": 78813825298, "time": 239, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "7326787477" }, { "job": 78813825372, "time": 221, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7326782598" }, { "job": 78813825307, "time": 220, "config": "linux-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7326782013" }, { "job": 78813825373, "time": 228, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7326784132" }, { "job": 78813825285, "time": 193, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7326773615" }, { "job": 78813825284, "time": 289, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "ERROR", "artifact": "7326804367" }, { "job": 78813825336, "time": 195, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7326774125" }, { "job": 78813825251, "time": 263, "config": "macos-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7326795337" }, { "job": 78813304082, "time": 214, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7326713158" }, { "job": 78813825478, "time": 169, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7326766016" }, { "job": 78813825337, "time": 148, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7326759785" }, { "job": 78813825331, "time": 173, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7326767483" }, { "job": 78813825347, "time": 131, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7326754642" } ], "_buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/mortamini/hhsmm", "_commit": { "id": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "author": "Morteza Amini <49465740+mortamini@users.noreply.github.com>", "committer": "GitHub ", "message": "Add files via upload", "time": 1661571689 }, "_maintainer": { "name": "Morteza Amini", "email": "morteza.amini@ut.ac.ir", "login": "mortamini", "description": "I am Associate Professor of Statistics at University of Tehran", "uuid": 49465740 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "CMAPSS", "role": "Depends" }, { "package": "mvtnorm", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "mice", "role": "Imports" }, { "package": "cpr", "role": "Imports" }, { "package": "psych", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "mortamini", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 3, "_contributors": [ { "user": "mortamini", "count": 5, "uuid": 49465740 } ], "_userbio": { "uuid": 49465740, "type": "user", "name": "Morteza Amini", "description": "I am Associate Professor of Statistics at University of Tehran" }, "_downloads": { "count": 262, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hhsmm" }, "_devurl": "https://github.com/mortamini/hhsmm", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/hhsmm.html", "manual.pdf" ], "_homeurl": "https://github.com/mortamini/hhsmm", "_realowner": "mortamini", "_cranurl": true, "_releases": [ { "version": "0.1", "date": "2021-05-31" }, { "version": "0.1.2", "date": "2021-06-16" }, { "version": "0.1.3", "date": "2021-09-13" }, { "version": "0.2.0", "date": "2021-10-13" }, { "version": "0.2.1", "date": "2021-10-18" }, { "version": "0.2.2", "date": "2021-11-23" }, { "version": "0.2.3", "date": "2021-12-01" }, { "version": "0.2.4", "date": "2022-01-10" }, { "version": "0.2.5", "date": "2022-02-08" }, { "version": "0.3.1", "date": "2022-02-28" }, { "version": "0.3.2", "date": "2022-05-29" }, { "version": "0.3.3", "date": "2022-08-05" }, { "version": "0.3.4", "date": "2023-01-07" }, { "version": "0.3.5", "date": "2023-03-06" }, { "version": "0.3.6", "date": "2023-08-08" }, { "version": "0.3.7", "date": "2024-05-01" }, { "version": "0.4.0", "date": "2024-05-08" }, { "version": "0.4.1", "date": "2024-09-03" }, { "version": "0.4.2", "date": "2024-09-04" } ], "_exports": [ "cov.miss.mix.wt", "cov.mix.wt", "dmixlm", "dmixmvnorm", "dnonpar", "hhsmmdata", "hhsmmfit", "hhsmmspec", "homogeneity", "initial_cluster", "initial_estimate", "initialize_model", "lagdata", "ltr_clus", "ltr_reg_clus", "make_model", "miss_mixmvnorm_mstep", "mixdiagmvnorm_mstep", "mixlm_mstep", "mixmvnorm_mstep", "nonpar_mstep", "rmixar", "rmixlm", "rmixmvnorm", "score", "train_test_split" ], "_help": [ { "page": "additive_reg_mstep", "title": "the M step function of the EM algorithm", "topics": [ "additive_reg_mstep" ] }, { "page": "addreg_hhsmm_predict", "title": "predicting the response values for the regime switching model", "topics": [ "addreg_hhsmm_predict" ] }, { "page": "cov.miss.mix.wt", "title": "weighted covariance for data with missing values", "topics": [ "cov.miss.mix.wt" ] }, { "page": "cov.mix.wt", "title": "weighted covariance", "topics": [ "cov.mix.wt" ] }, { "page": "dmixlm", "title": "pdf of the mixture of Gaussian linear (Markov-switching) models for hhsmm", "topics": [ "dmixlm" ] }, { "page": "dmixmvnorm", "title": "pdf of the mixture of multivariate normals for hhsmm", "topics": [ "dmixmvnorm" ] }, { "page": "dnonpar", "title": "pdf of the mixture of B-splines for hhsmm", "topics": [ "dnonpar" ] }, { "page": "dnorm_additive_reg", "title": "pdf of the Gaussian additive (Markov-switching) model for hhsmm", "topics": [ "dnorm_additive_reg" ] }, { "page": "hhsmmdata", "title": "convert to hhsmm data", "topics": [ "hhsmmdata" ] }, { "page": "hhsmmfit", "title": "hhsmm model fit", "topics": [ "hhsmmfit" ] }, { "page": "hhsmmspec", "title": "hhsmm specification", "topics": [ "hhsmmspec" ] }, { "page": "homogeneity", "title": "Computing maximum homogeneity of two state sequences", "topics": [ "homogeneity" ] }, { "page": "initial_cluster", "title": "initial clustering of the data set", "topics": [ "initial_cluster" ] }, { "page": "initial_estimate", "title": "initial estimation of the model parameters for a specified emission distribution", "topics": [ "initial_estimate" ] }, { "page": "initialize_model", "title": "initialize the hhsmmspec model for a specified emission distribution", "topics": [ "initialize_model" ] }, { "page": "lagdata", "title": "Create hhsmm data of lagged time series", "topics": [ "lagdata" ] }, { "page": "ltr_clus", "title": "left to right clustering", "topics": [ "ltr_clus" ] }, { "page": "ltr_reg_clus", "title": "left to right linear regression clustering", "topics": [ "ltr_reg_clus" ] }, { "page": "make_model", "title": "make a hhsmmspec model for a specified emission distribution", "topics": [ "make_model" ] }, { "page": "miss_mixmvnorm_mstep", "title": "the M step function of the EM algorithm", "topics": [ "miss_mixmvnorm_mstep" ] }, { "page": "mixdiagmvnorm_mstep", "title": "the M step function of the EM algorithm", "topics": [ "mixdiagmvnorm_mstep" ] }, { "page": "mixlm_mstep", "title": "the M step function of the EM algorithm", "topics": [ "mixlm_mstep" ] }, { "page": "mixmvnorm_mstep", "title": "the M step function of the EM algorithm", "topics": [ "mixmvnorm_mstep" ] }, { "page": "nonpar_mstep", "title": "the M step function of the EM algorithm", "topics": [ "nonpar_mstep" ] }, { "page": "predict.hhsmm", "title": "prediction of state sequence for hhsmm", "topics": [ "predict.hhsmm" ] }, { "page": "predict.hhsmmspec", "title": "prediction of state sequence for hhsmm", "topics": [ "predict.hhsmmspec" ] }, { "page": "raddreg", "title": "Random data generation from the Gaussian additive (Markov-switching) model for hhsmm model", "topics": [ "raddreg" ] }, { "page": "rmixar", "title": "Random data generation from the mixture of Gaussian linear (Markov-switching) autoregressive models for hhsmm model", "topics": [ "rmixar" ] }, { "page": "rmixlm", "title": "Random data generation from the mixture of Gaussian linear (Markov-switching) models for hhsmm model", "topics": [ "rmixlm" ] }, { "page": "rmixmvnorm", "title": "Random data generation from the mixture of multivariate normals for hhsmm model", "topics": [ "rmixmvnorm" ] }, { "page": "score", "title": "the score of new observations", "topics": [ "score" ] }, { "page": "simulate.hhsmmspec", "title": "Simulation of data from hhsmm model", "topics": [ "simulate.hhsmmspec" ] }, { "page": "train_test_split", "title": "Splitting the data sets to train and test", "topics": [ "train_test_split" ] } ], "_rundeps": [ "backports", "base64enc", "bit", "bit64", "boot", "broom", "bslib", "cachem", "cli", "clipr", "CMAPSS", "codetools", "cpp11", "cpr", "crayon", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "forcats", "foreach", "fs", "generics", "ggplot2", "glmnet", "glue", "GPArotation", "gtable", "haven", "highr", "hms", "htmltools", "htmlwidgets", "isoband", "iterators", "jomo", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "lme4", "magrittr", "MASS", "Matrix", "memoise", "mice", "mime", "minqa", "misc3d", "mitml", "mnormt", "mvtnorm", "nlme", "nloptr", "nnet", "numDeriv", "ordinal", "pan", "pillar", "pkgconfig", "plot3D", "prettyunits", "progress", "psych", "purrr", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "readr", "reformulas", "rgl", "rlang", "rmarkdown", "rpart", "S7", "sass", "scales", "shape", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "tinytex", "tzdb", "ucminf", "utf8", "vctrs", "viridisLite", "vroom", "withr", "xfun", "yaml" ], "_score": 2.4771212547196626, "_indexed": true, "_nocasepkg": "hhsmm", "_universes": [ "mortamini" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.5", "date": "2026-06-01T08:29:24.000Z", "distro": "noble", "arch": "aarch64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "dcb2af01aa8c5ad36ee1461212910cded5f37ed1b333772213e758447993fb13", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.7.0", "os": "linux", "version": "0.2.5", "date": "2026-06-01T08:28:59.000Z", "distro": "noble", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "d4a909bd802cb11d969645e6407dea9474e2f4bf64c5105378a0de856725af14", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "linux", "version": "0.2.5", "date": "2026-06-01T08:29:05.000Z", "distro": "noble", "arch": "aarch64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "b2eae057d17d17bf6ed7259dff46bc8fdd79f3dab0968d8a46a77e602db3ab13", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "linux", "version": "0.2.5", "date": "2026-06-01T08:29:06.000Z", "distro": "noble", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "b7cf4bfed35265ca7e7b1aab540e380294347c06d9ded5a66a516189345298dd", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.5.3", "os": "mac", "version": "0.2.5", "date": "2026-06-01T08:28:33.000Z", "arch": "aarch64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "b1070bb517433e4cc36a719847bb3754b3d0e9c06885ebfa84da7bad0b64180d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.5.3", "os": "mac", "version": "0.2.5", "date": "2026-06-01T08:29:33.000Z", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "6d27e7dc584b84f95728d7072ab77625ad09bcdd694e93be718769bdfb1b671f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "mac", "version": "0.2.5", "date": "2026-06-01T08:28:33.000Z", "arch": "aarch64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "7d178400a7f9919d2384d23844e37498dbfda579564c4449e022d158e9201f8d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "mac", "version": "0.2.5", "date": "2026-06-01T08:29:19.000Z", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "3ef39df266d0d61c7c92cad1607fd26c6436aacfae1bf5d6b1a0a2e1323c6b67", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.5", "date": "2026-06-01T08:28:53.000Z", "arch": "emscripten", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "15173a87532c419274b4257f527b5877668dc766d7bd14b72e12fff2d30a824e", "status": "success", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.7.0", "os": "win", "version": "0.2.5", "date": "2026-06-01T08:27:20.000Z", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "ff57a58032f2607ffb17e04442fa5a66e34ff2bca500c5ff6cc480068fd85769", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.5.3", "os": "win", "version": "0.2.5", "date": "2026-06-01T08:27:13.000Z", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "94d5a6f7c2d84c7d8b5db0ef6c08fdbad5e2eff6c2f6dd1277365c33625260f0", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" }, { "r": "4.6.0", "os": "win", "version": "0.2.5", "date": "2026-06-01T08:27:14.000Z", "arch": "x86_64", "commit": "9b1989404ca8b1d7f60fc01f0e6e2145c61685b5", "fileid": "50d79666028aef8c4d9a7efceb57460a10f63712ffc39989dfa1d39ff497c4a4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/mortamini/actions/runs/26743558404" } ] }